Strengthening European research cooperation on plant genetic resources conservation and use
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Abstract
Plant genetic resources (PGR) are a vital research infrastructure and an important asset to increase the resiliency of agri-food systems, conserve agrobiodiversity and mitigate the effects of climate change. In the current scenarios of climate change and biodiversity loss, it becomes increasingly urgent to ensure the conservation of existing crop diversity and assure its availability for research and breeding to enable the development of new, adapted crops. Throughout Europe, more than 400 collections conserve PGR of over 6,500 genera, with over 2 million accessions documented in the European Search Catalogue for Plant Genetic Resources (EURISCO). To make these resources available to breeders, more research investment in these collections is needed. Here, we analyze the participation of European genebanks in collaborative projects within the EU Horizon scheme as an indicator for the use of PGR collections in research. We highlight two Horizon projects, AGENT and G2P-SOL, and the ECPGR initiative European Evaluation Network (EVA), which have brought together genebanks and other stakeholders to create tools and knowledge on PGR. Their experience could be translated into a dedicated, large European research infrastructure for PGR (GRACE-RI), suggested in the Plant Genetic Resources Strategy for Europe and currently in the concept phase by the Horizon Europe project PRO-GRACE. GRACE-RI will connect European research institutes involved in PGR conservation and research and will be key to ensuring access to well-documented and maintained PGR and methods for their characterization and utilization, preventing further loss of plant biodiversity which is increasingly threatening European agriculture and natural landscapes.
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Alercia, A, S Diulgheroff, and M Mackay (2015). FAO/Bioversity Multi-Crop Passport Descriptors V.2.1 [MCPD V.2.1]. URL: https://hdl.handle.net/10568/69166.
Asdal, Å (2025). “The Svalbard Global Seed Vault - Conserving Plant Genetic Resources for European and Global Food Security”. Genetic Resources(S2), pp. 49–57. DOI: https://doi.org/10.46265/genresj.EBBB2856. DOI: https://doi.org/10.46265/genresj.EBBB2856
Balconi, Carlotta et al. (2024). “Genetic and Phenotypic Evaluation of European Maize Landraces as a Tool for Conservation and Valorization of Agrobiodiversity”. Biology 13(6), p. 454. DOI: https://doi.org/10.3390/biology13060454. DOI: https://doi.org/10.3390/biology13060454
Beier, Sebastian et al. (2022). “Recommendations for the Formatting of Variant Call Format (VCF) Files to Make Plant Genotyping Data FAIR”. F1000Research 11(231). DOI: https://doi.org/10.12688/f1000research.109080.2. DOI: https://doi.org/10.12688/f1000research.109080.2
Bilbrey, Emma A et al. (2021). “Integrating Genomics and Multiplatform Metabolomics Enables Metabolite Quantitative Trait Loci Detection in Breeding-Relevant Apple Germplasm”. New Phytologist 232(5), pp. 1944–58. DOI: https://doi.org/10.1111/nph.17693. DOI: https://doi.org/10.1111/nph.17693
CBD (2011). Nagoya Protocol on Access to Genetic Resources and the Fair and Equitable Sharing of Benefits Arising from their Utilization to the Convention on Biological Diversity. URL: https://www.cbd.int/abs/doc/protocol/nagoya-protocol-en.pdf
Derbyshire, M C, J Batley, and D Edwards (2022). “Use of Multiple ‘omics Techniques to Accelerate the Breeding of Abiotic Stress Tolerant Crops”. Current Plant Biology 32, p. 100262. DOI: https://doi.org/10.1016/j.cpb.2022.100262. DOI: https://doi.org/10.1016/j.cpb.2022.100262
ECPGR (2021). Plant Genetic Resources Strategy for Europe. Rome, Italy: European Cooperative Programme for Plant Genetic Resources. URL: https://ecpgr.org/pgrstrategy21.
Engels, Johannes M M and Andreas W Ebert (2024). “How Can We Strengthen the Global Genetic Resources’ Conservation and Use System?” Plants 13(5), pp. 702–702. DOI: https://doi.org/10.3390/plants13050702. DOI: https://doi.org/10.3390/plants13050702
FAO (2009). International Treaty on Plant Genetic Resources for Food and Agriculture. URL: https://www.fao.org/4/i0510e/i0510e00.htm.
Gollin, Douglas (2020). “Conserving Genetic Resources for Agriculture: Economic Implications of Emerging Science”. Food Security 12(5), pp. 919–927. DOI: https://doi.org/10.1007/s12571-020-01035-w. DOI: https://doi.org/10.1007/s12571-020-01035-w
Gonzalez, Maria Y et al. (2021). “Genomic Prediction Models Trained with Historical Records Enable Populating the German Ex Situ Genebank Bio-Digital Resource Center of Barley (Hordeum Sp.) with Information on Resistances to Soilborne Barley Mosaic Viruses”. Theoretical and Applied Genetics 134(7), pp. 2181–96. DOI: https://doi.org/10.1007/s00122-021-03815-0. DOI: https://doi.org/10.1007/s00122-021-03815-0
Goritschnig, S et al. (2023). “Exploring European Carrot Diversity through Public-Private Partnerships in EVA Carrot”. Acta Horticulturae 1384, pp. 63–70. DOI: https://doi.org/10.17660/ActaHortic.2023.1384.8. DOI: https://doi.org/10.17660/ActaHortic.2023.1384.8
Gramazio, Pietro et al. (2020). “Morphoagronomic Characterization and Whole-Genome Resequencing of Eight Highly Diverse Wild and Weedy S. Pimpinellifolium and S. Lycopersicum Var. Cerasiforme Accessions Used for the First Interspecific Tomato MAGIC Population”. Horticulture Research 7(1), pp. 1–16. DOI: https://doi.org/10.1038/s41438-020-00395-w. DOI: https://doi.org/10.1038/s41438-020-00395-w
Gullotta, G, J Engels, and M Halewood (2023). “What Plant Genetic Resources for Food and Agriculture Are Available under the Plant Treaty and Where Is This Information?” Plants 12(23), pp. 3944–3944. DOI: https://doi.org/10.3390/plants12233944. DOI: https://doi.org/10.3390/plants12233944
Halewood, Michael et al. (2018). “Plant Genetic Resources for Food and Agriculture: Opportunities and Challenges Emerging from the Science and Information Technology Revolution”. New Phytologist 217(4), pp. 1407–1426. DOI: https://doi.org/10.1111/nph.14993. DOI: https://doi.org/10.1111/nph.14993
El-Hanafi, S et al. (2023). “Genomic Predictions to Leverage Phenotypic Data across Genebanks”. Frontiers in Plant Science 14, p. 1227656. DOI: https://doi.org/10.3389/fpls.2023.1227656. DOI: https://doi.org/10.3389/fpls.2023.1227656
Hanson, Jean et al. (2024). “Opportunities for Strategic Decision Making in Managing Ex Situ Germplasm Collections”. Plant Genetic Resources: Characterization and Utilization 22(4), pp. 195–200. DOI: https://doi.org/10.1017/S1479262123000357. DOI: https://doi.org/10.1017/S1479262123000357
Haussmann, B I G et al. (2004). “Plant Genetic Resources in Crop Improvement”. Plant Genetic Resources 2(1), pp. 3–21. DOI: https://doi.org/10.1079/PGR200430. DOI: https://doi.org/10.1079/PGR200430
IPBES (2019). Global Assessment Report on Biodiversity and Ecosystem Services of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services. DOI: https://doi.org/10.5281/zenodo.6417333.
Kell, Shelagh, Mario Marino, and Nigel Maxted (2017). “Bottlenecks in the PGRFA Use System: Stakeholders’ Perspectives”. Euphytica 213(8), p. 170. DOI: https://doi.org/10.1007/s10681-017-1935-z. DOI: https://doi.org/10.1007/s10681-017-1935-z
Khoury, C K et al. (2022). “Crop Genetic Erosion: Understanding and Responding to Loss of Crop Diversity”. New Phytologist 233(1), pp. 84–118. DOI: https://doi.org/10.1111/nph.17733. DOI: https://doi.org/10.1111/nph.17733
Kotni, Pragna et al. (2023). “EURISCO Update 2023: The European Search Catalogue for Plant Genetic Resources, a Pillar for Documentation of Genebank Material”. Nucleic Acids Research 51(D1), pp. D1465–69. DOI: https://doi.org/10.1093/nar/gkac852. DOI: https://doi.org/10.1093/nar/gkac852
Kumar, Suman et al. (2024). “The EURISCO-EVA Information System, an Innovative Approach to the Data Management of Multi-Site Crop Evaluation Data”. Genetic Resources 5(10), pp. 117–142. DOI: https://doi.org/10.46265/genresj.IHXU5248. DOI: https://doi.org/10.46265/genresj.IHXU5248
Mascher, Martin et al. (2019). “Genebank Genomics Bridges the Gap between the Conservation of Crop Diversity and Plant Breeding”. Nature Genetics 51(7), pp. 1076–81. DOI: https://doi.org/10.1038/s41588-019-0443-6. DOI: https://doi.org/10.1038/s41588-019-0443-6
McCouch et al. (2013). “Feeding the Future”. Nature 499(7456), pp. 23–24. DOI: https://doi.org/10.1038/499023a. DOI: https://doi.org/10.1038/499023a
Nankar, Amol N et al. (2020). “A Step towards Balkan Capsicum Annuum L. Core Collection: Phenotypic and Biochemical Characterization of 180 Accessions for Agronomic, Fruit Quality, and Virus Resistance Traits”. PLOS ONE 15(8), e0237741. DOI: https://doi.org/10.1371/journal.pone.0237741. DOI: https://doi.org/10.1371/journal.pone.0237741
O Berkner, Marcel, W Albert, et al. (2022). “Choosing the Right Tool: Leveraging of Plant Genetic Resources in Wheat (Triticum Aestivum L.) Benefits from Selection of a Suitable Genomic Prediction Model”. Theoretical and Applied Genetics 135(12), pp. 4391–4407. DOI: https://doi.org/10.1007/s00122-022-04227-4. DOI: https://doi.org/10.1007/s00122-022-04227-4
O Berkner, Marcel, Stephan Weise, et al. (2024). “Genomic Prediction Reveals Unexplored Variation in Grain Protein and Lysine Content across a Vast Winter Wheat Genebank Collection”. Frontiers in Plant Science 14, p. 1270298. DOI: https://doi.org/10.3389/fpls.2023.1270298. DOI: https://doi.org/10.3389/fpls.2023.1270298
Pilling, Dafydd, Julie Bélanger, and Irene Hoffmann (2020). “Declining Biodiversity for Food and Agriculture Needs Urgent Global Action”. Nature Food 1(3), pp. 144–191. DOI: https://doi.org/10.1038/s43016-020-0040-y. DOI: https://doi.org/10.1038/s43016-020-0040-y
Selby, Peter et al. (2019). “BrAPI-an Application Programming Interface for Plant Breeding Applications”. Bioinformatics 35(20), pp. 4147–55. DOI: https://doi.org/10.1093/bioinformatics/btz190. DOI: https://doi.org/10.1093/bioinformatics/btz190
Stefan´czyk, Emil et al. (2020). “Marker-Assisted Pyramiding of Potato Late Blight Resistance Genes Rpi-Rzc1 and Rpi-Phu1 on Di- and Tetraploid Levels”. Molecular Breeding 40(9), p. 89. DOI: https://doi.org/10.1007/s11032-020-01169-x. DOI: https://doi.org/10.1007/s11032-020-01169-x
Swarup, S et al. (2021). “Genetic Diversity Is Indispensable for Plant Breeding to Improve Crops”. Crop Science 61(2), pp. 839–52. DOI: https://doi.org/10.1002/csc2.20377. DOI: https://doi.org/10.1002/csc2.20377
Toppino, Laura et al. (2021). “Pepper and Eggplant Genetic Resources”. In: The Wild Solanums Genomes. Ed. by Domenico Carputo, Riccardo Aversano, and Maria Raffaella Ercolano. Cham: Springer International Publishing, pp. 119–154. doi: https://doi.org/10.1007/978-3-030-30343-3_6 DOI: https://doi.org/10.1007/978-3-030-30343-3_6
Tripodi, Pasquale et al. (2023). “Development and Application of Single Primer Enrichment Technology (SPET) SNP Assay for Population Genomics Analysis and Candidate Gene Discovery in Lettuce”. Frontiers in Plant Science 14(1252777). DOI: https://doi.org/10.3389/fpls.2023.1252777. DOI: https://doi.org/10.3389/fpls.2023.1252777
Van Hintum, Theo and Erik Wijker (2024). “Quality Management in a Genebank Environment: Principles and Experiences at the Centre for Genetic Resources, The Netherlands (CGN)”. Genetic Resources(S2), pp. 6–12. DOI: https://doi.org/10.46265/genresj.RFXB3570. DOI: https://doi.org/10.46265/genresj.RFXB3570
Vangheluwe, Nick et al. (2023). “Facilitating Research Uptake by the Seed and Plant Breeding Sector for Bioeconomy Development in the EU”. EFB Bioeconomy Journal 3, p. 100059. DOI: https://doi.org/10.1016/j.bioeco.2023.100059. DOI: https://doi.org/10.1016/j.bioeco.2023.100059
Weise, Stephan, Ulrike Lohwasser, and Markus Oppermann (2020). “Document or Lose It-On the Importance of Information Management for Genetic Resources Conservation in Genebanks”. Plants 9(8), pp. 1050–1050. DOI: https://doi.org/10.3390/plants9081050. DOI: https://doi.org/10.3390/plants9081050
Wilkinson, Mark D et al. (2016). “The FAIR Guiding Principles for Scientific Data Management and Stewardship”. Scientific Data 3(1), pp. 1–9. DOI: https://doi.org/10.1038/sdata.2016.18. DOI: https://doi.org/10.1038/sdata.2016.18
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